Bwa mem example. BWA-MEM ¶ bwamem · 1 contributor · 1 v...
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Bwa mem example. BWA-MEM ¶ bwamem · 1 contributor · 1 version bwa - Burrows-Wheeler Alignment Tool BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. The bwa mem algorithm is one of the three algorithms provided by BWA. The use Part 2. Below we show an example for using the BWA-MEM algorithm (command bwa mem), which can process short Illumina reads (70bp) as well as longer reads up to 1 MB. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The bwa mem algorithm is one of the three algorithms provided by BWA. The first algorithm is designed for Illumina sequence reads up to 100bp, while the rest two for longer sequences ranged from 70bp to 1Mbp. sam format. r1|2. The alignment output is saved in SAM file format.
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